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Abexinostat (PCI-24781) HDAC inhibitor

Kat.-Nr.: S1090

Abexinostat (PCI-24781, CRA-024781) is a novel pan-HDAC inhibitor that mostly targets HDAC1 with Ki of 7 nM. It shows modest potency to HDACs 2, 3, 6, and 10 and greater than 40-fold selectivity against HDAC8. This compound is currently in Phase 1/2.
Abexinostat (PCI-24781) HDAC inhibitor Chemical Structure

Chemische Struktur

Molekulargewicht: 397.42

Springe zu

Qualitätskontrolle (Quality Control)

Charge: Reinheit: 99.21%
99.21

Zellkultur, Behandlung & Arbeitskonzentration
(Cell Culture, Treatment & Working Concentration)

Zelllinien Assay-Typ Konzentration Inkubationszeit Formulierung Aktivitätsbeschreibung PMID
HeLa Function assay 2 hrs Inhibition of dye-labeled tracer binding to HDAC10 (unknown origin) transfected in human HeLa cells measured after 2 hrs by nano-luciferase reporter gene-based BRET assay, IC50=0.007943μM 30964290
TC32 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for TC32 cells 29435139
DAOY qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for DAOY cells 29435139
SJ-GBM2 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for SJ-GBM2 cells 29435139
A673 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for A673 cells 29435139
SK-N-MC qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for SK-N-MC cells 29435139
BT-37 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for BT-37 cells 29435139
NB-EBc1 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for NB-EBc1 cells 29435139
U-2 OS qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for U-2 OS cells 29435139
Saos-2 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for Saos-2 cells 29435139
SK-N-SH qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for SK-N-SH cells 29435139
NB1643 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for NB1643 cells 29435139
LAN-5 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for LAN-5 cells 29435139
BT-12 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for BT-12 cells 29435139
Rh18 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for Rh18 cells 29435139
OHS-50 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for OHS-50 cells 29435139
RD qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for RD cells 29435139
MG 63 (6-TG R) qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for MG 63 (6-TG R) cells 29435139
Rh30 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for Rh30 cells 29435139
Rh41 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Primary screen for Rh41 cells 29435139
NB1643 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for NB1643 cells 29435139
A673 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for A673 cells) 29435139
SK-N-MC qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for SK-N-MC cells 29435139
BT-12 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for BT-12 cells 29435139
LAN-5 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for LAN-5 cells 29435139
DAOY qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for DAOY cells 29435139
NB-EBc1 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for NB-EBc1 cells 29435139
SJ-GBM2 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for SJ-GBM2 cells 29435139
BT-37 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for BT-37 cells 29435139
TC32 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for TC32 cells 29435139
MG 63 (6-TG R) qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for MG 63 (6-TG R) cells 29435139
U-2 OS qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for U-2 OS cells 29435139
Rh41 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for Rh41 cells 29435139
RD qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for RD cells 29435139
Rh18 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for Rh18 cells 29435139
Rh30 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for Rh30 cells 29435139
Saos-2 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for Saos-2 cells 29435139
OHS-50 qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for OHS-50 cells 29435139
SK-N-SH qHTS assay qHTS of pediatric cancer cell lines to identify multiple opportunities for drug repurposing: Confirmatory screen for SK-N-SH cells 29435139
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Chemische Informationen, Lagerung & Stabilität (Chemical Information, Storage & Stability)

Molekulargewicht 397.42 Formel

C21H23N3O5

Lagerung (Ab dem Eingangsdatum)
CAS-Nr. 783355-60-2 SDF herunterladen Lagerung von Stammlösungen

Synonyme CRA-024781 Smiles CN(C)CC1=C(OC2=CC=CC=C21)C(=O)NCCOC3=CC=C(C=C3)C(=O)NO

Löslichkeit (Solubility)

In vitro
Charge:

DMSO : 80 mg/mL (201.29 mM)
(Feuchtigkeitskontaminiertes DMSO kann die Löslichkeit verringern. Verwenden Sie frisches, wasserfreies DMSO.)

Water : Insoluble

Ethanol : Insoluble

Molaritätsrechner

Masse Konzentration Volumen Molekulargewicht
Verdünnungsrechner Molekulargewichtsrechner

In vivo
Charge:

In-vivo-Formulierungsrechner (Klare Lösung)

Schritt 1: Geben Sie die untenstehenden Informationen ein (Empfohlen: Ein zusätzliches Tier zur Berücksichtigung von Verlusten während des Experiments)

mg/kg g μL

Schritt 2: Geben Sie die In-vivo-Formulierung ein (Dies ist nur der Rechner, keine Formulierung. Bitte kontaktieren Sie uns zuerst, wenn es im Abschnitt "Löslichkeit" keine In-vivo-Formulierung gibt.)

% DMSO % % Tween 80 % ddH2O
%DMSO %

Berechnungsergebnisse:

Arbeitskonzentration: mg/ml;

Methode zur Herstellung der DMSO-Stammlösung: mg Wirkstoff vorgelöst in μL DMSO ( Konzentration der Stammlösung mg/mL, Bitte kontaktieren Sie uns zuerst, wenn die Konzentration die DMSO-Löslichkeit der Wirkstoffcharge überschreitet. )

Methode zur Herstellung der In-vivo-Formulierung: Nehmen Sie μL DMSO Stammlösung, dann hinzufügenμL PEG300, mischen und klären, dann hinzufügenμL Tween 80, mischen und klären, dann hinzufügen μL ddH2O, mischen und klären.

Methode zur Herstellung der In-vivo-Formulierung: Nehmen Sie μL DMSO Stammlösung, dann hinzufügen μL Maisöl, mischen und klären.

Hinweis: 1. Bitte stellen Sie sicher, dass die Flüssigkeit klar ist, bevor Sie das nächste Lösungsmittel hinzufügen.
2. Achten Sie darauf, das/die Lösungsmittel der Reihe nach hinzuzufügen. Sie müssen sicherstellen, dass die bei der vorherigen Zugabe erhaltene Lösung eine klare Lösung ist, bevor Sie mit der Zugabe des nächsten Lösungsmittels fortfahren. Physikalische Methoden wie Vortex, Ultraschall oder ein heißes Wasserbad können zur Unterstützung des Lösens verwendet werden.

Wirkmechanismus (Mechanism of Action)

Targets/IC50/Ki
HDAC1
(Cell-free assay)
7 nM(Ki)
HDAC3/SMRT
8.2 nM(Ki)
HDAC6
17 nM(Ki)
HDAC2
(Cell-free assay)
19 nM(Ki)
HDAC10
24 nM
HDAC8
280 nM
In vitro
Abexinostat (PCI-24781) exhibits potent antitumor activity against a variety of tumor cell lines with GI50 ranging from 0.15 μM to 3.09 μM, and also has an antiproliferative effect on HUVEC endothelial cells with GI50 of 0.43 μM. Treatment with this compound causes dose-dependent accumulation of both acetylated histones and acetylated tubulin in HCT116 or DLD-1 cells, induces expression of p21, and leads to PARP cleavage and accumulation of the γH2AX. Inhibition of HDAC enzymes by PCI-24781 leads to a significant reduction in the transcription of genes specifically associated with HR, including RAD51. Consistent with inhibition of HR, it results in a decreased ability to perform homology directed repair of I-SceI-induced chromosome breaks in transfected CHO cells. It induces S phase depletion, G2 cell cycle arrest, and apoptosis in soft tissue sarcoma (STS) cells, and also causes Rad51 transcriptional repression in STS cells potentially mediated via enhanced E2F1 binding to the Rad51 proximal promoter. Additionally, this compound induces caspase and reactive oxygen species-dependent apoptosis through NF-κB mechanisms in Hodgkin lymphoma and non-Hodgkin lymphoma cell lines.
Kinase-Assay
HDAC Aktivität
Die HDAC-Aktivität wird unter Verwendung eines kontinuierlichen Trypsin-gekoppelten Assays gemessen. Für die Inhibitorkarakterisierung werden Messungen in einem Reaktionsvolumen von 100 μL unter Verwendung von 96-Well-Assay-Platten durchgeführt. Für jedes Isoenzym wird das HDAC-Protein in Reaktionspuffer [50 mM HEPES, 100 mM KCl, 0,001% Tween 20, 5% DMSO (pH 7,4), ergänzt mit Rinderserumalbumin in Konzentrationen von 0% (HDAC1), 0,01% (HDAC2, 3, 8 und 10) oder 0,05% (HDAC6)] mit Abexinostat (PCI-24781) in verschiedenen Konzentrationen gemischt und 15 Minuten inkubiert. Trypsin wird zu einer Endkonzentration von 50 nM hinzugefügt, und Acetyl-Gly-Ala-(N-acetyl-Lys)-AMC wird zu einer Endkonzentration von 25 μM (HDAC1, 3 und 6), 50 μM (HDAC2 und 10) oder 100 μM (HDAC8) hinzugefügt, um die Reaktion zu initiieren. Negativkontrollreaktionen werden in Abwesenheit dieser Verbindung in acht Replikaten durchgeführt. Die Reaktionen werden in einem Fluoreszenz-Plattenlesegerät überwacht. Nach einer 30-minütigen Verzögerungszeit wird die Fluoreszenz über einen Zeitraum von 30 Minuten unter Verwendung einer Anregungswellenlänge von 355 nm und einer Detektionswellenlänge von 460 nm gemessen. Die Zunahme der Fluoreszenz mit der Zeit wird als Maß für die Reaktionsrate verwendet. Hemmkonstanten Ki(app) werden mit dem Programm BatchKi erhalten.
In vivo
Abexinostat (PCI-24781) was administered at 200 mg/kg once daily every other day (q.o.d.), which significantly inhibited the growth of HCT116 and DLD-1 xenografts in mice by 69% and 59%, respectively. In the HCT116 model, administration of this compound at 20 mg/kg, 40 mg/kg, 80 mg/kg, or 160 mg/kg once daily for 4 consecutive days followed by 3 days without treatment each week (q.d. × 4 per week) caused inhibition of tumor growth by 48%, 57%, 82.2%, or 80.0%, respectively.
Literatur
  • [4] https://pubmed.ncbi.nlm.nih.gov/19417023/

Klinische Studieninformationen (Clinical Trial Information)

(Daten von https://clinicaltrials.gov, aktualisiert am 2024-05-22)

NCT-Nummer Rekrutierung Erkrankungen Sponsor/Kooperationspartner Startdatum Phasen
NCT05698524 Recruiting
Recurrent High Grade Glioma|Anaplastic Astrocytoma|Anaplastic Oligodendroglioma|Glioblastoma|Gliosarcoma
University of Nebraska|Xynomic Pharmaceuticals Inc.
June 26 2023 Phase 1
NCT03934567 Recruiting
Lymphoma Follicular
Xynomic Pharmaceuticals Inc.
April 22 2020 Phase 2
NCT03939182 Active not recruiting
Diffuse Large B-cell Lymphoma|Mantle Cell Lymphoma
Memorial Sloan Kettering Cancer Center|Janssen Scientific Affairs LLC|Xynomic Pharmaceuticals Inc.
May 29 2019 Phase 1
NCT03600441 Active not recruiting
Follicular Lymphoma
Xynomic Pharmaceuticals Inc.
August 27 2018 Phase 2
NCT01543763 Active not recruiting
Metastatic Solid Tumors
Pamela Munster|Pharmacyclics LLC.|Novartis|Xynomic Pharmaceuticals Inc.|GlaxoSmithKline Research and Education Foundation for Cardiovascular Disease|University of California San Francisco
June 25 2012 Phase 1